Epernicus: Yanbin Yin, Ph.D.

Yanbin Yin, Ph.D.

Position:
Post Doctoral Fellow

Biochemistry and Molecular Biology

Institute of Bioinformatics

University of Georgia (Athens, GA)
Advisor:
Ying Xu
Degrees:

Ph.D., Bioinformatics, Peking University (Beijing, China)

B.S., Biochemistry, Yantai University (Yantai, China)
Past Advisors:

Daniel Fischer (as Post Doctoral Fellow)

Songgang Li (as Graduate Student - Ph.D.)

Jingchu Luo (as Graduate Student - Ph.D.)
Research:
Evolutionary biology, evolutionary genomics, bioinformatics

Plant cell wall biosynthesis and microbial degradation
Metagenomics
Origin and evolution of plant cell wall

Comparative and evolutionary study of ORFans
Evolutionary study of microbial and viral genome biology
Comparative and evolutionary study of important protein families
New genes identification and preliminary validation using in silico approaches
Pseudogenes and gene duplications

Communities:

Yanbin Yin's Genealogy

The Adobe Flash Player plugin (version 8) is required to view the genealogy tree.
Download the plugin here.

Yanbin Yin's Publications (23)

Glycosyltransferases Family (GT8), in Plant Cell Wall Polysacharides: Biosysynthesis and Bioengineering
Yanbin Yin, Debra Mohnen, Ivana Gelineo-Albersheim, Ying Xu, Hahn G Michael

Annual Plant Review Series, Blackwell Publishing. (in press)
GolgiP: prediction of Golgi resident proteins in plants.
Chou WC, Yin Y, Xu Y

Bioinformatics (Oxford, England). 2010 Aug 23
Identification of Novel Proteins Involved in Plant Cell-Wall Synthesis Based on Protein-Protein Interaction Data.
Zhou C, Yin Y, Dam P, Xu Y

Journal of proteome research. 2010 Aug 19
Syringyl lignin biosynthesis is directly regulated by a secondary cell wall master switch.
Zhao Q, Wang H, Yin Y, Xu Y, Chen F, Dixon RA

Proceedings of the National Academy of Sciences of the United States of America. 2010 Jul 26
Evolution and function of the plant cell wall synthesis-related Glycosyltransferase Family 8.
Yin Y, Chen H, Hahn MG, Mohnen D, Xu Y

Plant physiology. 2010 Jun 3
Genomic arrangement of bacterial operons is constrained by biological pathways encoded in the genome.
Yin Y, Zhang H, Olman V, Xu Y

Proceedings of the National Academy of Sciences of the United States of America. 2010 Apr 6;107(14):6310-5
Identification of a bifunctional UDP-4-keto-pentose/UDP-xylose synthase in the plant pathogenic bacterium Ralstonia solanacearum strain GMI1000, a distinct member of the 4,6-dehydratase and decarboxylase family.
Gu X, Glushka J, Yin Y, Xu Y, Denny T, Smith J, Jiang Y, Bar-Peled M

The Journal of biological chemistry. 2010 Mar 19;285(12):9030-40
Switchgrass (Panicum virgatum) possesses a divergent family of cinnamoyl CoA reductases with distinct biochemical properties.
Escamilla-Treviño LL, Shen H, Uppalapati SR, Ray T, Tang Y, Hernandez T, Yin Y, Xu Y, Dixon RA

The New phytologist. 2010 Jan;185(1):143-55
Reclassification of 'Anaerocellum thermophilum' as Caldicellulosiruptor bescii strain DSM 6725T sp. nov.
Yang SJ, Kataeva I, Wiegel J, Yin Y, Dam P, Xu Y, Westpheling J, Adams MW

International journal of systematic and evolutionary microbiology. 2009 Oct 2
Two poplar glycosyltransferase genes, PdGATL1.1 and PdGATL1.2, are functional orthologs to PARVUS/AtGATL1 in Arabidopsis.
Kong Y, Zhou G, Avci U, Gu X, Jones C, Yin Y, Xu Y, Hahn MG

Molecular plant. 2009 Sep;2(5):1040-50
Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725.
Kataeva IA, Yang SJ, Dam P, Poole FL, Yin Y, Zhou F, Chou WC, Xu Y, Goodwin L, Sims DR, Detter JC, Hauser LJ, Westpheling J, Adams MW

Journal of bacteriology. 2009 Jun;191(11):3760-1
A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production
Hui Shen*, Yanbin Yin*, Fang Chen, Ying Xu, Rick Dixon

Bioenergy Research. 2009;2(4):217-232
pDAWG: an Integrated Database for Plant Cell-Wall Genes
Fenglou Mao, Yanbin Yin, Fengfeng Zhou, Wen-chi Chou, Chan Zhou, Huiling Chen, Ying Xu

Bioenergy Research. 2009;2(4):209-216
The cellulose synthase superfamily in fully sequenced plants and algae.
Yin Y, Huang J, Xu Y

BMC plant biology. 2009;9:99
Identification and investigation of ORFans in the viral world.
Yin Y, Fischer D

BMC genomics. 2008;9:24
Genomic characterization of ribitol teichoic acid synthesis in Staphylococcus aureus: genes, genomic organization and gene duplication.
Qian Z, Yin Y, Zhang Y, Lu L, Li Y, Jiang Y

BMC genomics. 2006;7:74
Identification of genes regulated by Wnt/beta-catenin pathway and involved in apoptosis via microarray analysis.
Huang M, Wang Y, Sun D, Zhu H, Yin Y, Zhang W, Yang S, Quan L, Bai J, Wang S, Chen Q, Li S, Xu N

BMC cancer. 2006;6:221
On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer.
Yin Y, Fischer D

BMC evolutionary biology. 2006;6:63
Comparative study of apoptosis-related gene loci in human, mouse and rat genomes.
Yin YB, Zhang Y, Yu P, Luo JC, Jiang Y, Li SG

Acta biochimica et biophysica Sinica. 2005 May;37(5):341-8
SPD--a web-based secreted protein database.
Chen Y, Zhang Y, Yin Y, Gao G, Li S, Jiang Y, Gu X, Luo J

Nucleic acids research. 2005 Jan 1;33(Database issue):D169-73
PCAS--a precomputed proteome annotation database resource.
Zhang Y, Yin Y, Chen Y, Gao G, Yu P, Luo J, Jiang Y

BMC genomics. 2003 Nov 1;4(1):42
PepPat, a pattern-based oligopeptide homology search method and the identification of a novel tachykinin-like peptide.
Jiang Y, Gao G, Fang G, Gustafson EL, Laverty M, Yin Y, Zhang Y, Luo J, Greene JR, Bayne ML, Hedrick JA, Murgolo NJ

Mammalian genome : official journal of the International Mammalian Genome Society. 2003 May;14(5):341-9
Advances in G-protein-coupled receptors and related bioinformatics study
Yanbin Yin, Jingchu Luo, Ying Jiang

Chinese Science bulletin. 2003;48(6):511-516

Websites

Home Page

Join Epernicus (membership is free)

Epernicus is open to current and former research scientists.

Already a member?
Sign in to view Yanbin's full profile.

Yanbin Yin, Ph.D.

Post Doctoral Fellow

Evolutionary biology, evolutionary genomics, bioinformatics

Yanbin Yin's Genealogy

Yanbin Yin's Publications (23)

Websites