Epernicus: Yana Bromberg, Ph.D.

Yana Bromberg, Ph.D.

Positions:
Assistant Professor

Biochemistry and Microbiology

Rutgers University (New Brunswick, NJ)

Post-doctoral research scientist

Biochemistry and Molecular Biophysics

Columbia University Medical Center (New York, NY)
Advisor:
Burkhard Rost
Degrees:

Ph.D., Bioinformatics, Columbia University Medical Center (New York, NY)

M.Phil., Biomedical Informatics, Columbia University Medical Center (New York, NY)

B.A., Biology, Stony Brook University (Stony Brook, NY)

B.Eng., Computer Science, Stony Brook University (Stony Brook, NY)
Past Advisors:

Rudolph Leibel (as Graduate Student - Ph.D.)
Research:

Communities:

Yana Bromberg's Genealogy

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Yana Bromberg's Publications (11)

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.
Wainreb G, Ashkenazy H, Bromberg Y, Starovolsky-Shitrit A, Haliloglu T, Ruppin E, Avraham KB, Rost B, Ben-Tal N

Nucleic acids research. 2010 Jul 1;38 Suppl:W523-8
Functional analyses of variants reveal a significant role for dominant negative and common alleles in oligogenic Bardet-Biedl syndrome.
Zaghloul NA, Liu Y, Gerdes JM, Gascue C, Oh EC, Leitch CC, Bromberg Y, Binkley J, Leibel RL, Sidow A, Badano JL, Katsanis N

Proceedings of the National Academy of Sciences of the United States of America. 2010 Jun 8;107(23):10602-7
Conserved amino acids within the adenovirus 2 E3/19K protein differentially affect downregulation of MHC class I and MICA/B proteins.
Sester M, Koebernick K, Owen D, Ao M, Bromberg Y, May E, Stock E, Andrews L, Groh V, Spies T, Steinle A, Menz B, Burgert HG

Journal of immunology (Baltimore, Md. : 1950). 2010 Jan 1;184(1):255-67
In silico mutagenesis: a case study of the melanocortin 4 receptor.
Bromberg Y, Overton J, Vaisse C, Leibel RL, Rost B

The FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 2009 Sep;23(9):3059-69
New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.
Bromberg Y, Yachdav G, Ofran Y, Schneider R, Rost B

Current opinion in drug discovery & development. 2009 May;12(3):408-19
Association of functionally significant Melanocortin-4 but not Melanocortin-3 receptor mutations with severe adult obesity in a large North American case-control study.
Calton MA, Ersoy BA, Zhang S, Kane JP, Malloy MJ, Pullinger CR, Bromberg Y, Pennacchio LA, Dent R, McPherson R, Ahituv N, Vaisse C

Human molecular genetics. 2009 Mar 15;18(6):1140-7
Correlating protein function and stability through the analysis of single amino acid substitutions.
Bromberg Y, Rost B

BMC bioinformatics. 2009;10 Suppl 8:S8
SNAP predicts effect of mutations on protein function.
Bromberg Y, Yachdav G, Rost B

Bioinformatics (Oxford, England). 2008 Oct 15;24(20):2397-8
Comprehensive in silico mutagenesis highlights functionally important residues in proteins.
Bromberg Y, Rost B

Bioinformatics (Oxford, England). 2008 Aug 15;24(16):i207-12
Positional cloning of "Lisch-Like", a candidate modifier of susceptibility to type 2 diabetes in mice.
Dokmanovic-Chouinard M, Chung WK, Chevre JC, Watson E, Yonan J, Wiegand B, Bromberg Y, Wakae N, Wright CV, Overton J, Ghosh S, Sathe GM, Ammala CE, Brown KK, Ito R, LeDuc C, Solomon K, Fischer SG, Leibel RL

PLoS genetics. 2008;4(7):e1000137
SNAP: predict effect of non-synonymous polymorphisms on function.
Bromberg Y, Rost B

Nucleic acids research. 2007;35(11):3823-35

Websites

SNAP webserver

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Yana Bromberg, Ph.D.

Assistant Professor

Post-doctoral research scientist

Yana Bromberg's Genealogy

Yana Bromberg's Publications (11)

Websites