Epernicus: Todd W Harris, Ph.D.

Todd W Harris, Ph.D.

Position:
Project Manager and Lead Developer - WormBase

Cold Spring Harbor Laboratory (Cold Spring Harbor, NY)
Degrees:

Ph.D., Genetics, University of Utah (Salt Lake City, UT)

B.A., Biology, Colorado College (Colorado Springs, CO)
Past Advisors:

Lincoln D. Stein (as Post Doctoral Fellow)

Erik M Jorgensen (as Graduate Student - Ph.D.)

Ken Andrews (as Undergraduate Student)
Research:
Large-scale biological databases

Communities:

Todd Harris's Genealogy

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Todd Harris's Publications (14)

WormBase 2007.
Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Ozersky P, Petcherski A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW

Nucleic acids research. 2008 Jan;36(Database issue):D612-7
WormBase: new content and better access.
Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J

Nucleic acids research. 2007 Jan;35(Database issue):D506-10
WormBook: the online review of Caenorhabditis elegans biology.
Girard LR, Fiedler TJ, Harris TW, Carvalho F, Antoshechkin I, Han M, Sternberg PW, Stein LD, Chalfie M

Nucleic acids research. 2007 Jan;35(Database issue):D472-5
WormBase: better software, richer content.
Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Harris TW, Kenny EE, Kishore R, Lawson D, Lee R, Müller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Spooner W, Tuli MA, Van Auken K, Wang D, Durbin R, Spieth J, Stein LD, Sternberg PW

Nucleic acids research. 2006 Jan 1;34(Database issue):D475-8
Comparative genomics in C. elegans, C. briggsae, and other Caenorhabditis species.
Coghlan A, Stajich JE, Harris TW

Methods in molecular biology (Clifton, N.J.). 2006;351:13-29
WormBase: methods for data mining and comparative genomics.
Harris TW, Stein LD

Methods in molecular biology (Clifton, N.J.). 2006;351:31-50
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.
Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Canaran P, Chan J, Chen CK, Chen WJ, Cunningham F, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Pai S, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD

Nucleic acids research. 2005 Jan 1;33(Database issue):D383-9
WormBase as an integrated platform for the C. elegans ORFeome.
Chen N, Lawson D, Bradnam K, Harris TW, Stein LD

Genome research. 2004 Oct;14(10B):2155-61
WormBase: a multi-species resource for nematode biology and genomics.
Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD

Nucleic acids research. 2004 Jan 1;32(Database issue):D411-7
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, Griffiths-Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullikin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wei C, Willey D, Wilson RK, Durbin R, Waterston RH

PLoS biology. 2003 Nov;1(2):E45
WormBase: a cross-species database for comparative genomics.
Harris TW, Lee R, Schwarz E, Bradnam K, Lawson D, Chen W, Blasier D, Kenny E, Cunningham F, Kishore R, Chan J, Muller HM, Petcherski A, Thorisson G, Day A, Bieri T, Rogers A, Chen CK, Spieth J, Sternberg P, Durbin R, Stein LD

Nucleic acids research. 2003 Jan 1;31(1):133-7
The generic genome browser: a building block for a model organism system database.
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S

Genome research. 2002 Oct;12(10):1599-610
Studies of synaptic vesicle endocytosis in the nematode C. elegans.
Harris TW, Schuske K, Jorgensen EM

Traffic (Copenhagen, Denmark). 2001 Sep;2(9):597-605
Mutations in synaptojanin disrupt synaptic vesicle recycling.
Harris TW, Hartwieg E, Horvitz HR, Jorgensen EM

The Journal of cell biology. 2000 Aug 7;150(3):589-600

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Todd W Harris, Ph.D.

Project Manager and Lead Developer - WormBase

Large-scale biological databases

Todd Harris's Genealogy

Todd Harris's Publications (14)

Websites