Patrick H Bradley

Patrick H Bradley, A.B.

(Ph.D. in progress)
  • Position:
    Graduate Student - Ph.D.

    Molecular Biology

    Quantitative and Computational Biology

    Princeton University (Princeton, NJ)

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  • Advisors:

    Joshua D. Rabinowitz, Olga Troyanskaya

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  • Degrees:
     
    Ph.D. (in progress), Molecular Biology, Princeton University (Princeton, NJ)
     
    A.B., Biology, Harvard University (Cambridge, MA)
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  • Past Advisors:
     
    Daniel A. Goodenough (as Undergraduate Student)
     
    Kathleen Brummel-Ziedins (as Visiting Student)
     
    Thomas Orfeo (as Visiting Student)
     
    Kenneth G. Mann (as Visiting Student)
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  • Research:
    I'm interested in 1) how metabolism and gene expression regulate one another, and 2) why there are apparently redundant genes in metabolic networks.

    Cells are able to sense what nutrients are available and in what amounts, in order to plan appropriately for the future. Understanding these processes is critical for metabolic engineering (e.g., biofuel production) as well as medicine (e.g., tumor development, in which cellular metabolism becomes dysregulated to allow for rapid growth). My research focuses on what molecules cells are able to sense, how these molecules are sensed, and how metabolic signals inform cellular decisions such as setting the growth rate or exiting the cell cycle. Furthermore, I am also interested in the regulation of apparently redundant metabolic enzymes, and how these enzymes benefit the cell. To answer these questions, I am using both computational (e.g. machine learning, statistical models) and experimental techniques (e.g. competition experiments, barcode sequencing).

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  • Other Experience:

    2005 iGEM team member, Harvard University

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  • Honors:

    2009 ISMB Travel Fellowship (Stockholm)

    2008 ISMB Travel Fellowship (Toronto)

    2006 NSF Graduate Research Fellowship Program, honorable mention

Life Sciences
Physical Sciences
Communities:

Patrick Bradley's Genealogy

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Patrick Bradley's Publications (3)



Patrick Bradley's Posters and Presentations (2)

  • Leveraging the context-specific coordination of transcript and metabolite concentrations to discover gene-metabolite interactions. (presentation)

    Patrick H Bradley

    ISMB, Highlights Session; 06/2009
  • Concentration changes of transcripts and metabolites in Saccharomyces cerevisiae are coordinated in response to nutrient deprivation. (presentation)

    Patrick H Bradley

    Yeast Genetics Meeting, "Databases and Computation Tools" workshop; 07/2008


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