Epernicus: Kateryna D. Makova, Ph.D.

Kateryna D. Makova, Ph.D.

Position:
Associate Professor

Biology

Pennsylvania State University (University Park, PA)
Degrees:

Ph.D., Biology, Texas Tech University (Lubbock, TX)
Past Advisors:

Robert J. Baker (as Graduate Student - Ph.D.)
Research:

Communities:

Kateryna Makova's Genealogy

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Kateryna Makova's Publications (16)

The genome-wide determinants of human and chimpanzee microsatellite evolution.
Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD

Genome research. 2008 Jan;18(1):30-8
Human-macaque comparisons illuminate variation in neutral substitution rates.
Tyekucheva S, Makova KD, Karro JE, Hardison RC, Miller W, Chiaromonte F

Genome biology. 2008;9(4):R76
A macaque's-eye view of human insertions and deletions: differences in mechanisms.
Kvikstad EM, Tyekucheva S, Chiaromonte F, Makova KD

PLoS computational biology. 2007 Sep;3(9):1772-82
A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly.
Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A

Genome research. 2007 Jun;17(6):960-4
Evolutionary and biomedical insights from the rhesus macaque genome.
Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, Hardison RC, Makova KD, Miller W, Milosavljevic A, Palermo RE, Siepel A, Sikela JM, Attaway T, Bell S, Bernard KE, Buhay CJ, Chandrabose MN, Dao M, Davis C, Delehaunty KD, Ding Y, Dinh HH, Dugan-Rocha S, Fulton LA, Gabisi RA, Garner TT, Godfrey J, Hawes AC, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Kirkness EF, Cree A, Fowler RG, Lee S, Lewis LR, Li Z, Liu YS, Moore SM, Muzny D, Nazareth LV, Ngo DN, Okwuonu GO, Pai G, Parker D, Paul HA, Pfannkoch C, Pohl CS, Rogers YH, Ruiz SJ, Sabo A, Santibanez J, Schneider BW, Smith SM, Sodergren E, Svatek AF, Utterback TR, Vattathil S, Warren W, White CS, Chinwalla AT, Feng Y, Halpern AL, Hillier LW, Huang X, Minx P, Nelson JO, Pepin KH, Qin X, Sutton GG, Venter E, Walenz BP, Wallis JW, Worley KC, Yang SP, Jones SM, Marra MA, Rocchi M, Schein JE, Baertsch R, Clarke L, Csürös M, Glasscock J, Harris RA, Havlak P, Jackson AR, Jiang H, Liu Y, Messina DN, Shen Y, Song HX, Wylie T, Zhang L, Birney E, Han K, Konkel MK, Lee J, Smit AF, Ullmer B, Wang H, Xing J, Burhans R, Cheng Z, Karro JE, Ma J, Raney B, She X, Cox MJ, Demuth JP, Dumas LJ, Han SG, Hopkins J, Karimpour-Fard A, Kim YH, Pollack JR, Vinar T, Addo-Quaye C, Degenhardt J, Denby A, Hubisz MJ, Indap A, Kosiol C, Lahn BT, Lawson HA, Marklein A, Nielsen R, Vallender EJ, Clark AG, Ferguson B, Hernandez RD, Hirani K, Kehrer-Sawatzki H, Kolb J, Patil S, Pu LL, Ren Y, Smith DG, Wheeler DA, Schenck I, Ball EV, Chen R, Cooper DN, Giardine B, Hsu F, Kent WJ, Lesk A, Nelson DL, O'brien WE, Prüfer K, Stenson PD, Wallace JC, Ke H, Liu XM, Wang P, Xiang AP, Yang F, Barber GP, Haussler D, Karolchik D, Kern AD, Kuhn RM, Smith KE, Zwieg AS

Science (New York, N.Y.). 2007 Apr 13;316(5822):222-34
Mammalian male mutation bias: impacts of generation time and regional variation in substitution rates.
Goetting-Minesky MP, Makova KD

Journal of molecular evolution. 2006 Oct;63(4):537-44
Genomic environment predicts expression patterns on the human inactive X chromosome.
Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, Makova KD

PLoS genetics. 2006 Sep 29;2(9):e151
Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison.
Taylor J, Tyekucheva S, Zody M, Chiaromonte F, Makova KD

Molecular biology and evolution. 2006 Mar;23(3):565-73
Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network.
Chung WY, Albert R, Albert I, Nekrutenko A, Makova KD

BMC bioinformatics. 2006;7:46
Oscillating evolution of a mammalian locus with overlapping reading frames: an XLalphas/ALEX relay.
Nekrutenko A, Wadhawan S, Goetting-Minesky P, Makova KD

PLoS genetics. 2005 Aug;1(2):e18
Insertions and deletions are male biased too: a whole-genome analysis in rodents.
Makova KD, Yang S, Chiaromonte F

Genome research. 2004 Apr;14(4):567-73
Comparative genomics.
Miller W, Makova KD, Nekrutenko A, Hardison RC

Annual review of genomics and human genetics. 2004;5:15-56
Divergence in the spatial pattern of gene expression between human duplicate genes.
Makova KD, Li WH

Genome research. 2003 Jul;13(7):1638-45
Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum.
Mu J, Duan J, Makova KD, Joy DA, Huynh CQ, Branch OH, Li WH, Su XZ

Nature. 2002 Jul 18;418(6895):323-6
Strong male-driven evolution of DNA sequences in humans and apes.
Makova KD, Li WH

Nature. 2002 Apr 11;416(6881):624-6
The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study.
Nekrutenko A, Makova KD, Li WH

Genome research. 2002 Jan;12(1):198-202

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Kateryna D. Makova, Ph.D.

Associate Professor

Kateryna Makova's Genealogy

Kateryna Makova's Publications (16)