Kalyan C Vinnakota

Kalyan C Vinnakota, Ph.D.

  • Position:
    Research Scientist I

    Biotechnology and Bioengineering Center

    Medical College of Wisconsin (Milwaukee, WI)

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  • Degrees:
     
    Ph.D., Bioengineering, University of Washington (Seattle, WA)
     
    B.Eng., Biomedical Engineering, Osmania University (Hyderabad, India)
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  • Past Advisors:
     
    Daniel A. Beard (as Post Doctoral Fellow)
     
    Martin J. Kushmerick (as Graduate Student - Ph.D.)
     
    Dhanjoo N. Ghista (as Undergraduate Student)
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  • Research:
    My research focuses on the regulation of cellular energy metabolism and the physical biology of cellular signaling proteins.

    My research addresses questions on transport processes and energy metabolism of cells using a combination of computational models and model driven experiments. In my recent research I have specifically addressed questions on 1) localization, diffusion, binding and membrane-exchange processes of Ras2 a signaling protein in yeast relevant to cancer; 2) defining metabolic phenotypes (glycolysis and ATP hydrolysis rates) of resting muscles; and 3) identifying catalytic mechanisms of individual enzymes and transporters constituting the metabolic pathways of interest. My computational approach is based on detailed kinetic modeling of individual enzymes and transporters, which are then built into a differential equation (ordinary or partial) based pathway model parameterized and validated by independent experimental data sets. My experimental approach, which is guided by computer model based experiment design, includes characterization of individual enzyme kinetics and whole organelle kinetics. The overall goal is to be able to synthesize information on individual parts into a predictive model of system behavior in normal and pathological states.

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  • Honors:

    2004-2005 American Heart Association (Pacific Mountain Affiliate) Predoctoral Fellowship

    2004 American Heart Association (Pacific Mountain Affiliate) Outstanding Predoctoral Fellow

Life Sciences
Physical Sciences
Communities:

Kalyan Vinnakota's Genealogy

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Kalyan Vinnakota's Publications (16)



Kalyan Vinnakota's Posters and Presentations (6)

  • . Calcium has no stimulatory effect on respiration or NADH synthesis in intact rat heart mitochondria utilizing physiological substrates (poster)

    Kalyan C Vinnakota and Daniel A Beard

    Experimental Biology; 04/2011
  • Design of experiments for identification of complex biochemical systems with applications to mitochondrial bioenergetics. (presentation)

    Kalyan C Vinnakota, Daniel A Beard and Ranjan K Dash

    31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society; 09/2009
  • . Diffusion and Exchange of Non-Integral Membrane Associated Fluorophores During Fluorescence Recovery After Photobleaching with the Confocal Laser Scanning Microscope: ROI Size Analysis of EGFP:Ras2 Plasma Membrane Diffusion in Saccharomyces cerevisiae. (poster)

    Kalyan C Vinnakota, David A Mitchell, Robert J Deschenes, Tetsuro Wakatsuki and Daniel A Beard

    Biophysical Society; 02/2009
  • A computational model of dynamics of pH, phosphoenergeties and glycogenolysis in mouse skeletal muscle: acidosis does not inhibit resting glycogenolysis. (poster)

    Kalyan C Vinnakota and Martin J Kushmerick

    Experimental Biology; 04/2007
  • Dynamics of pH changes and phosphoenergetics in mouse skeletal muscle during transient anoxia are modeled by physical chemical principles. (poster)

    Kalyan C Vinnakota, Melissa L Kemp and Martin J Kushmerick

    XXXV International congress of Physiological Sciences/Experimental Biology; 03/2005
  • Anatomical basis for modeling cardiac metabolic functions. (poster)

    Kalyan C Vinnakota and James B. Bassingthwaighte

    Experimental Biology; 04/2003

One Figure

One Figure for Kalyan C Vinnakota

Localization of GFP-Ras2 in yeast. A) Wildtype GFP-Ras2 is mainly localized to the plasma membrane B) GFP-Ras2C318S is localized to both plasma and endomembranes.



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