Epernicus: Jerome Waldispuhl, Ph.D.

Jerome Waldispuhl, Ph.D.

Positions:
Assistant Professor

Computer science

McGill University (Montreal, Canada)

Research Affiliate

Computer Science and Artificial Intelligence Laboratory

Massachusetts Institute of Technology (Cambridge, MA)
Degrees:

Ph.D., Computer Science, Ecole Polytechnique (Palaiseau, France)
Past Advisors:

Bonnie Berger (as Post Doctoral Fellow)

Peter Clote (as Research Associate)

Srinivas Devadas (as Research Associate)

Jean-Marc Steyaert (as Graduate Student - Ph.D.)
Research:
Protein and RNA structure prediction

Communities:

Jerome Waldispuhl's Genealogy

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Jerome Waldispuhl's Publications (10)

RNAmutants: a web server to explore the mutational landscape of RNA secondary structures.
Waldispühl J, Devadas S, Berger B, Clote P

Nucleic acids research. 2009 Jun 16
Simultaneous Alignment and Folding of Proteins
Jerome Waldispuhl, Charles W O'Donnell, Sebastian Will, Srinivas Devadas, Rolf Backofen, Bonnie Berger

Accepted at the 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2009). 2009
Efficient algorithms for probing the RNA mutation landscape.
Waldispühl J, Devadas S, Berger B, Clote P

PLoS computational biology. 2008 Aug;4(8):e1000124
Modeling ensembles of transmembrane beta-barrel proteins.
Waldispühl J, O'Donnell CW, Devadas S, Clote P, Berger B

Proteins. 2008 May 15;71(3):1097-112
Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model.
Waldispühl J, Clote P

Journal of computational biology : a journal of computational molecular cell biology. 2007 Mar;14(2):190-215
Predicting transmembrane beta-barrels and interstrand residue interactions from sequence.
Waldispühl J, Berger B, Clote P, Steyaert JM

Proteins. 2006 Oct 1;65(1):61-74
transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels.
Waldispühl J, Berger B, Clote P, Steyaert JM

Nucleic acids research. 2006 Jul 1;34(Web Server issue):W189-93
Energy landscape of k-point mutants of an RNA molecule.
Clote P, Waldispühl J, Behzadi B, Steyaert JM

Bioinformatics (Oxford, England). 2005 Nov 15;21(22):4140-7
Modeling and Predicting All-α Transmembrane Proteins Including Helix-helix Pairing
Jerome Waldispuhl, Jean-Marc Steyaert

Theoretical Computer Science. 2005:67-92
An approximate matching algorithm for finding (sub-)optimal sequences in S-attributed grammars.
Waldispühl J, Behzadi B, Steyaert JM

Bioinformatics (Oxford, England). 2002;18 Suppl 2:S250-9

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Jerome Waldispuhl, Ph.D.

Assistant Professor

Research Affiliate

Protein and RNA structure prediction

Jerome Waldispuhl's Genealogy

Jerome Waldispuhl's Publications (10)

Websites