Epernicus: Jeffrey E. Barrick

Jeffrey E. Barrick

Position:
Research Associate

Microbiology and Molecular Genetics

Michigan State University (East Lansing, MI)
Advisors:
Richard E. Lenski, Charles A. Ofria
Degrees:
Past Advisors:

Ronald R. Breaker (as Graduate Student - Ph.D.)

Richard R. Roberts (as Undergraduate Student)
Research:

Communities:

Jeffrey Barrick's Genealogy

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Jeffrey Barrick's Publications (25)

Genome evolution and adaptation in a long-term experiment with Escherichia coli.
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, Kim JF

Nature. 2009 Oct 29;461(7268):1243-7
Genome-wide Mutational Diversity in an Evolving Population of Escherichia coli.
Barrick JE, Lenski RE

Cold Spring Harbor symposia on quantitative biology. 2009 Sep 23
Predicting riboswitch regulation on a genomic scale.
Barrick JE

Methods in molecular biology (Clifton, N.J.). 2009;540:1-13
A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism.
Regulski EE, Moy RH, Weinberg Z, Barrick JE, Yao Z, Ruzzo WL, Breaker RR

Molecular microbiology. 2008 May;68(4):918-32
The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches.
Weinberg Z, Regulski EE, Hammond MC, Barrick JE, Yao Z, Ruzzo WL, Breaker RR

RNA (New York, N.Y.). 2008 May;14(5):822-8
A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain.
Roth A, Winkler WC, Regulski EE, Lee BW, Lim J, Jona I, Barrick JE, Ritwik A, Kim JN, Welz R, Iwata-Reuyl D, Breaker RR

Nature structural & molecular biology. 2007 Apr;14(4):308-17
The power of riboswitches.
Barrick JE, Breaker RR

Scientific American. 2007 Jan;296(1):50-7
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline.
Weinberg Z, Barrick JE, Yao Z, Roth A, Kim JN, Gore J, Wang JX, Lee ER, Block KF, Sudarsan N, Neph S, Tompa M, Ruzzo WL, Breaker RR

Nucleic acids research. 2007;35(14):4809-19
The distributions, mechanisms, and structures of metabolite-binding riboswitches.
Barrick JE, Breaker RR

Genome biology. 2007;8(11):R239
Balancing robustness and evolvability.
Lenski RE, Barrick JE, Ofria C

PLoS biology. 2006 Dec;4(12):e428
Identification of a large noncoding RNA in extremophilic eubacteria.
Puerta-Fernandez E, Barrick JE, Roth A, Breaker RR

Proceedings of the National Academy of Sciences of the United States of America. 2006 Dec 19;103(51):19490-5
Tandem riboswitch architectures exhibit complex gene control functions.
Sudarsan N, Hammond MC, Block KF, Welz R, Barrick JE, Roth A, Breaker RR

Science (New York, N.Y.). 2006 Oct 13;314(5797):300-4
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.
Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR

RNA (New York, N.Y.). 2005 May;11(5):774-84
Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria.
Corbino KA, Barrick JE, Lim J, Welz R, Tucker BJ, Puskarz I, Mandal M, Rudnick ND, Breaker RR

Genome biology. 2005;6(8):R70
A glycine-dependent riboswitch that uses cooperative binding to control gene expression.
Mandal M, Lee M, Barrick JE, Weinberg Z, Emilsson GM, Ruzzo WL, Breaker RR

Science (New York, N.Y.). 2004 Oct 8;306(5694):275-9
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, Collins J, Lee M, Roth A, Sudarsan N, Jona I, Wickiser JK, Breaker RR

Proceedings of the National Academy of Sciences of the United States of America. 2004 Apr 27;101(17):6421-6
Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes.
Nahvi A, Barrick JE, Breaker RR

Nucleic acids research. 2004;32(1):143-50
Achieving specificity in selected and wild-type N peptide-RNA complexes: the importance of discrimination against noncognate RNA targets.
Barrick JE, Roberts RW

Biochemistry. 2003 Nov 11;42(44):12998-3007
An mRNA structure that controls gene expression by binding S-adenosylmethionine.
Winkler WC, Nahvi A, Sudarsan N, Barrick JE, Breaker RR

Nature structural biology. 2003 Sep;10(9):701-7
Metabolite-binding RNA domains are present in the genes of eukaryotes.
Sudarsan N, Barrick JE, Breaker RR

RNA (New York, N.Y.). 2003 Jun;9(6):644-7
Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria.
Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR

Cell. 2003 May 30;113(5):577-86
Sequence analysis of an artificial family of RNA-binding peptides.
Barrick JE, Roberts RW

Protein science : a publication of the Protein Society. 2002 Nov;11(11):2688-96
Large libraries reveal diverse solutions to an RNA recognition problem.
Barrick JE, Takahashi TT, Ren J, Xia T, Roberts RW

Proceedings of the National Academy of Sciences of the United States of America. 2001 Oct 23;98(22):12374-8
Selection of RNA-binding peptides using mRNA-peptide fusions.
Barrick JE, Takahashi TT, Balakin A, Roberts RW

Methods (San Diego, Calif.). 2001 Mar;23(3):287-93
Optimized synthesis of RNA-protein fusions for in vitro protein selection.
Liu R, Barrick JE, Szostak JW, Roberts RW

Methods in enzymology. 2000;318:268-93

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Jeffrey E. Barrick

Research Associate

Jeffrey Barrick's Genealogy

Jeffrey Barrick's Publications (25)