Epernicus: Duygu Ucar, Ph.D.

Duygu Ucar, Ph.D.

Position:
Researcher

Genetics

Computer Science

Stanford University (Stanford, CA)
Advisor:
anne brunet
Degrees:

Ph.D., Computer Science, The Ohio State University (Columbus, OH)
Past Advisors:
Research:
Scientific Data Mining and Computational Biology. In particular, I focus on the development of algorithms for integrating and mining diverse high-throughput genetic and epigenetic datasets.
Other Experience:
2009-2010 NSF Postdoctoral Scholar - University of Iowa

2008 Guest Researcher - Technical University of Denmark
Honors:
2009-2010 NSF Computing Innovation Fellowship

2007 KDD - Best Applications Paper Award

Communities:

Duygu Ucar's Genealogy

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Duygu Ucar's Publications (5)

Discover regulatory DNA elements using chromatin signatures and artificial neural network.
Firpi HA, Ucar D, Tan K

Bioinformatics (Oxford, England). 2010 Jul 1;26(13):1579-86
Predicting functionality of protein-DNA interactions by integrating diverse evidence.
Ucar D, Beyer A, Parthasarathy S, Workman CT

Bioinformatics (Oxford, England). 2009 Jun 15;25(12):i137-44
Construction of a reference gene association network from multiple profiling data: application to data analysis.
Ucar D, Neuhaus I, Ross-MacDonald P, Tilford C, Parthasarathy S, Siemers N, Ji RR

Bioinformatics (Oxford, England). 2007 Oct 15;23(20):2716-24
An ensemble framework for clustering protein-protein interaction networks.
Asur S, Ucar D, Parthasarathy S

Bioinformatics (Oxford, England). 2007 Jul 1;23(13):i29-40
A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories.
Yang H, Parthasarathy S, Ucar D

Algorithms for molecular biology : AMB. 2007;2:3

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