Epernicus: Dariusz S Przybylski, Ph.D.

Dariusz S Przybylski, Ph.D.

Position:
Computational Biologist

Broad Institute of MIT and Harvard (Cambridge, MA)
Advisor:
David B. Jaffe
Degrees:

Ph.D., Computational Biology/Physics, Columbia University Medical Center (New York, NY)

M.A., Physics, Columbia University (New York, NY)

B.Sc., Physics, The City College of New York (New York, NY)
Past Advisors:

Burkhard Rost (as Post Doctoral Fellow)

Burkhard Rost (as Graduate Student - Ph.D.)
Research:
Honors:
1997-1999 Faculty Fellowship, Columbia University

1997 Robert E. Marshak Award, City College of New York

1996-1997 City College Fellowship, City College of New York

1995 Sidney Millman Prize for Academic Excellence, City College of New York

Communities:

Dariusz Przybylski's Genealogy

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Dariusz Przybylski's Publications (12)

Assemblathon 1: A competitive assessment of de novo short read assembly methods.
Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, Simpson JT, Fonseca NA, Birol I, Docking TR, Ho IY, Rokhsar DS, Chikhi R, Lavenier D, Chapuis G, Naquin D, Maillet N, Schatz MC, Kelley DR, Phillippy AM, Koren S, Yang SP, Wu W, Chou WC, Srivastava A, Shaw TI, Ruby JG, Skewes-Cox P, Betegon M, Dimon MT, Solovyev V, Seledtsov I, Kosarev P, Vorobyev D, Ramirez-Gonzalez R, Leggett R, Maclean D, Xia F, Luo R, Li Z, Xie Y, Liu B, Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Yin S, Sharpe T, Hall G, Kersey PJ, Durbin R, Jackman SD, Chapman JA, Huang X, Derisi JL, Caccamo M, Li Y, Jaffe DB, Green RE, Haussler D, Korf I, Paten B

Genome research. 2011 Dec;21(12):2224-41
High-quality draft assemblies of mammalian genomes from massively parallel sequence data.
Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A, Nusbaum C, Lander ES, Jaffe DB

Proceedings of the National Academy of Sciences of the United States of America. 2011 Jan 25;108(4):1513-8
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads.
Maccallum I, Przybylski D, Gnerre S, Burton J, Shlyakhter I, Gnirke A, Malek J, McKernan K, Ranade S, Shea TP, Williams L, Young S, Nusbaum C, Jaffe DB

Genome biology. 2009;10(10):R103
Powerful fusion: PSI-BLAST and consensus sequences.
Przybylski D, Rost B

Bioinformatics (Oxford, England). 2008 Sep 15;24(18):1987-93
Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments.
Przybylski D, Rost B

Nucleic acids research. 2007;35(7):2238-46
Improving fold recognition without folds.
Przybylski D, Rost B

Journal of molecular biology. 2004 Jul 30;341(1):255-69
Predicting transmembrane beta-barrels in proteomes.
Bigelow HR, Petrey DS, Liu J, Przybylski D, Rost B

Nucleic acids research. 2004;32(8):2566-77
EVA: Evaluation of protein structure prediction servers.
Koh IY, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Graña O, Pazos F, Valencia A, Sali A, Rost B

Nucleic acids research. 2003 Jul 1;31(13):3311-5
CAFASP3 in the spotlight of EVA.
Eyrich VA, Przybylski D, Koh IY, Grana O, Pazos F, Valencia A, Rost B

Proteins. 2003;53 Suppl 6:548-60
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.
Pollastri G, Przybylski D, Rost B, Baldi P

Proteins. 2002 May 1;47(2):228-35
Alignments grow, secondary structure prediction improves.
Przybylski D, Rost B

Proteins. 2002 Feb 1;46(2):197-205
EVA: continuous automatic evaluation of protein structure prediction servers.
Eyrich VA, Martí-Renom MA, Przybylski D, Madhusudhan MS, Fiser A, Pazos F, Valencia A, Sali A, Rost B

Bioinformatics (Oxford, England). 2001 Dec;17(12):1242-3

Websites

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Dariusz S Przybylski, Ph.D.

Computational Biologist

Dariusz Przybylski's Genealogy

Dariusz Przybylski's Publications (12)

Websites