Epernicus: Andrew J Rader, Ph.D.

Andrew J Rader, Ph.D.

Position:
Assistant Professor

Physics

Center for Mathematical Biosciences

Indiana University-Purdue University Indianapolis (Indianapolis, IN)
Degrees:

Ph.D., Physics & Biochemistry, Michigan State University (East Lansing, MI)
Past Advisors:

Ivet Bahar (as Research Associate)

Leslie A. Kuhn (as Graduate Student - Ph.D.)

Michael F. Thorpe (as Graduate Student - Ph.D.)
Research:

Communities:

Andrew Rader's Genealogy

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Andrew Rader's Publications (15)

Identification of putative, stable binding regions through flexibility analysis of HIV-1 gp120.
Tan H, Rader AJ

Proteins. 2009 Mar;74(4):881-94
Comparisons of protein family dynamics.
Rader AJ, Harrell JT

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2008:426-37
Comparison of stability predictions and simulated unfolding of rhodopsin structures.
Tastan O, Yu E, Ganapathiraju M, Aref A, Rader AJ, Klein-Seetharaman J

Photochemistry and photobiology. 2007 Mar-Apr;83(2):351-62
Predisposition of the dark state of rhodopsin to functional changes in structure.
Isin B, Rader AJ, Dhiman HK, Klein-Seetharaman J, Bahar I

Proteins. 2006 Dec 1;65(4):970-83
oGNM: online computation of structural dynamics using the Gaussian Network Model.
Yang LW, Rader AJ, Liu X, Jursa CJ, Chen SC, Karimi HA, Bahar I

Nucleic acids research. 2006 Jul 1;34(Web Server issue):W24-31
Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies.
Chennubhotla C, Rader AJ, Yang LW, Bahar I

Physical biology. 2005 Nov;2(4):S173-80
Coarse-grained normal mode analysis in structural biology.
Bahar I, Rader AJ

Current opinion in structural biology. 2005 Oct;15(5):586-92
iGNM: a database of protein functional motions based on Gaussian Network Model.
Yang LW, Liu X, Jursa CJ, Holliman M, Rader AJ, Karimi HA, Bahar I

Bioinformatics (Oxford, England). 2005 Jul 1;21(13):2978-87
Maturation dynamics of bacteriophage HK97 capsid.
Rader AJ, Vlad DH, Bahar I

Structure (London, England : 1993). 2005 Mar;13(3):413-21
Global ribosome motions revealed with elastic network model.
Wang Y, Rader AJ, Bahar I, Jernigan RL

Journal of structural biology. 2004 Sep;147(3):302-14
Identification of core amino acids stabilizing rhodopsin.
Rader AJ, Anderson G, Isin B, Khorana HG, Bahar I, Klein-Seetharaman J

Proceedings of the National Academy of Sciences of the United States of America. 2004 May 11;101(19):7246-51
Identifying protein folding cores from the evolution of flexible regions during unfolding.
Hespenheide BM, Rader AJ, Thorpe MF, Kuhn LA

Journal of molecular graphics & modelling. 2002 Dec;21(3):195-207
Protein unfolding: rigidity lost.
Rader AJ, Hespenheide BM, Kuhn LA, Thorpe MF

Proceedings of the National Academy of Sciences of the United States of America. 2002 Mar 19;99(6):3540-5
Protein flexibility predictions using graph theory.
Jacobs DJ, Rader AJ, Kuhn LA, Thorpe MF

Proteins. 2001 Aug 1;44(2):150-65
Protein flexibility and dynamics using constraint theory.
Thorpe MF, Lei M, Rader AJ, Jacobs DJ, Kuhn LA

Journal of molecular graphics & modelling. 2001;19(1):60-9

One Figure

rigid cluster decomposition of pyruvate dehydrogenase kinase

Websites

Rader Group Page

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